GgaINT0048253 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19177965-19178887:+
Coord C1 exon
chr7:19177965-19178046
Coord A exon
chr7:19178047-19178736
Coord C2 exon
chr7:19178737-19178887
Length
690 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
ATGATGTCCTGTTTATTCAGATA
3' ss Score
7.98
Exon sequences
Seq C1 exon
ATGATGGCTGACCTCATGTTCAGGAAGCAAGACTATGAACAAGCAGTCTTTCATTTCCAGCAGCTCCTCGAACGCAAGCCAG
Seq A exon
GTGAATGTTCAGTAGTGGTATTTTTAACTCTTTGGTACTGATGTCTAATGAGAGAGAGGTACAAATAACTAAAAAATGCTTTGTTATGTGCTAGTTATACTGCAAATAAAACAAAGACCACCACTGTCTATAAAAACATAAAGCTATCGTAGGGAAAGATTTTGCAAATAACTTCTCTCAGATATAATAATTTATACTGCTGCAATGCAACGTGCATTGTTTAACTTCAGCCAAATGTAGTGTTACTTACTTGTATCTGTAAAGCACTTTCTCTTGTATTTAAGCTATCAAGTGCACAAACACAAGCCTGGAAATTTATTTTTAGGCAAATAAAAAAATTATAGATGATTAAAGGAAACTTGGATTAGAATAAGGCTATGACCAGACAGAAATGTATTTAAATAATACTTTAATGAATGTCAGGCTTTCTATGAGTCTTTGTGTGAAATGAGCTGTAAGAGTACAGCAAATGTTTTTGAGTGCTCTTGAAAGTGAGGTACGATTGTACTTACTTTGTACAGATTATTTAGGAGTATTGCAGAGGTATCATTTCGTTTTTCATCTGACATTATTATATAACATGACTTATGTTACATTGTATCATTTTTGTATGCGAAAACAACGCAGGGTCTTCATCTCTAAATCTGTTTGCAGTGCAATAACTAAAATGATGATGTCCTGTTTATTCAG
Seq C2 exon
ATAACTATGCCACTCTGTCACGATTAATTGATCTGTTAAGAAGAGCTGGGAAACTAGAAGAAGTCCCAAGATTTCTTTTAATGGCTGAAAAACATTCTTCTAGAGCAAAGCTCGAACCAGGCTTTCACTACTGCAAAGGACTGTATCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(6.0=14.3),PF145591=TPR_19=PU(40.7=78.6)
A:
NA
C2:
PF145591=TPR_19=PD(57.4=60.8),PF0771912=TPR_2=PU(34.4=21.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTGACCTCATGTTCAGG
R:
CAGAGATACAGTCCTTTGCAGT
Band lengths:
230-920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]