BtaINT0154290 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12511983-12512966:+
Coord C1 exon
chr22:12511983-12512064
Coord A exon
chr22:12512065-12512815
Coord C2 exon
chr22:12512816-12512966
Length
751 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTTCTGCTCTCTTATTTTAGACA
3' ss Score
10.51
Exon sequences
Seq C1 exon
GTGATGGCTGACCTGATGTTTAGAAGACAGAAATACGAGGCTGCCATCAACCTCTACCACCAAGTCCTGGAGAAAGCACCAG
Seq A exon
GTAACTAACTGGCTGCATCACGCCTGCCCACCATGACTGCTGCTGGCAGTTCCCATCCAGCAAGGTCTGCTCTCGCCCAGAAGGGTGGGCCCTCTCCCCTCCTTCCTGACCGGGCAGAGGAAGCCCCTTCCTCTCTGATTGTTCCCAGAGAGGCAGGAAACTGATAAAGTCCCAGTGGAACGTGCCGGCCCTTTCCCAGTCCAAGGGGCCAGTTCCTGGTCTCAGGCAGGGCAGTGCTTGGTCCTGCCTGTCTGTCCCCAAAACCCAGACACTGTGGCTCAACCTAAGTTCGCCTTGGGAGGTCACAGCCTCCTGGAGGTGGCTAGAAATTCTCCCCTGACATGTAGCTCTCTTCCCACTCACTGTAGCATAAAACCGCCCTGTCTTGCTGGGGAAGGGGCCAGACATGAATAAGAGGCTTAGGCTTGAGCTCCAGCCAGGCCCATGTCAGGCCCAGCAGATCACAGCTATTAGGAATGCAGGTCTTGGAGCCAGACCTTCTAGGTCTGAATTCTGGTCTTCCACTTACCTGATGTGTAACCTTTGGCAGATTACTCAAAGTCTTTGTGCCTCAGCCTTCTCATCTATGAAATGGGAGCAGTAAGAGTGACCACTTCATGGTGTCTCAGTGGAGCCGCTGGGATGCCCACGTTCAGCCCAGTCCACCGGTGTCTCCTGGTCCTCTCTGCTTCCCCTACCTGATTCAGCTACTGGTTAGCACAGCCTGGAGGTTTCTGCTCTCTTATTTTAG
Seq C2 exon
ACAATTTTCCTGTATTGAACAAACTAATCGATCTGCTACGAAGAAGTGGCAAACTTGAGGACGCCCCTGCCGTCTTTGAATTGGCCGAGAAGATGTCCAGCCGGGTGCCTTTGGAGCCAGGGTTCAACTTCTGCAGAGGCATCTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PD(5.9=14.3),PF134321=TPR_16=PU(39.7=96.4)
A:
NA
C2:
PF134321=TPR_16=PD(58.8=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGGCTGACCTGATGTTT
R:
TGCCTCTGCAGAAGTTGAACC
Band lengths:
223-974
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]