HsaALTA0009681-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000184517 | ZFP1
Description
zinc finger protein 1 homolog (mouse) [Source:HGNC Symbol;Acc:23328]
Coordinates
chr16:75186807-75200790:+
Coord C1 exon
chr16:75186807-75186864
Coord A exon
chr16:75200668-75200709
Coord C2 exon
chr16:75200710-75200790
Length
42 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATAACAATATGCCATTTCAGGGA
3' ss Score
5.88
Exon sequences
Seq C1 exon
TTCTGCCTTCATAGTTCTCTGCCTTTGCCCAAAACTGCAGAAAATGAACAAATCCCAG
Seq A exon
GGATCAGTTTCATTCACGGATGTGACTGTGGACTTTACCCAG
Seq C2 exon
GAGGAATGGGAACAACTGGACCCCTCTCAGAGGATCCTATACATGGATGTGATGCTGGAGAATTATAGCAACTTACTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184517-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCTTCATAGTTCTCTGCC
R:
AAGTTGCTATAATTCTCCAGCATCAC
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)