HsaALTA0009681-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000184517 | ZFP1
Description
ZFP1 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23328]
Coordinates
chr16:75152909-75166892:+
Coord C1 exon
chr16:75152909-75152966
Coord A exon
chr16:75166745-75166769
Coord C2 exon
chr16:75166770-75166892
Length
25 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCACCAAATGATCATCTTAGGAT
3' ss Score
4.81
Exon sequences
Seq C1 exon
TTCTGCCTTCATAGTTCTCTGCCTTTGCCCAAAACTGCAGAAAATGAACAAATCCCAG
Seq A exon
GATGAATAACAATATGCCATTTCAG
Seq C2 exon
GGATCAGTTTCATTCACGGATGTGACTGTGGACTTTACCCAGGAGGAATGGGAACAACTGGACCCCTCTCAGAGGATCCTATACATGGATGTGATGCTGGAGAATTATAGCAACTTACTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184517-8-8,8-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTCTGCCTTTGCCCAAA
R:
GGGGTCCAGTTGTTCCCATTC
Band lengths:
112-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains