MmuALTA0020492-2/4 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000055835 | Zfp1
Description
zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:99154]
Coordinates
chr8:114182286-114190100:+
Coord C1 exon
chr8:114182286-114182341
Coord A exon
chr8:114189978-114190019
Coord C2 exon
chr8:114190020-114190100
Length
42 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AAGGAACTGTGTCATTTCAGGGA
3' ss Score
5.11
Exon sequences
Seq C1 exon
CTGTGCCTTTGTGCTTCTGTGCCTTCACCCCAACCCAGAAAATGATGGGGTCCCAG
Seq A exon
GGATCCGTTTCATTCACTGATGTAACTGTGGACTTCACCCAG
Seq C2 exon
GAGGAGTGGGAGCAACTGGACCCCTCGCAGAGGATTCTGTACATGGATGTAATGCTGGAGAACTACAGCAACTTACTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055835-6-6,6-5,6-4,6-3-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=FE(90.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCTTTGTGCTTCTGTG
R:
GTAAGTTGCTGTAGTTCTCCAGCA
Band lengths:
132-174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: