MmuEX0053012 @ mm9
Exon Skipping
Gene
ENSMUSG00000055835 | Zfp1
Description
zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:99154]
Coordinates
chr8:114182286-114194908:+
Coord C1 exon
chr8:114182286-114182341
Coord A exon
chr8:114189978-114190104
Coord C2 exon
chr8:114193391-114194908
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAGGAACTGTGTCATTTCAGGGA
3' ss Score
5.11
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CTGTGCCTTTGTGCTTCTGTGCCTTCACCCCAACCCAGAAAATGATGGGGTCCCAG
Seq A exon
GGATCCGTTTCATTCACTGATGTAACTGTGGACTTCACCCAGGAGGAGTGGGAGCAACTGGACCCCTCGCAGAGGATTCTGTACATGGATGTAATGCTGGAGAACTACAGCAACTTACTTTCAGTGG
Seq C2 exon
AAGTGTGGAAGGCTGATGGCCAGGTGGAGAGGGACCCCAGAGACCTGCAGAGGCAGGTGGGGTCACTTACAACCATCAAGAACCAACCACCAACTGAAGAAAGAGGCAGTCGTTTTGGAAAGACATTAACTCTGAACACAGACTTTGTTTCATTAAGACAAGTTCCCTATAAATATGATTTATATGAAAAAACTTTGAAGTACAATTCAGACTTACTTAGCAGTAGAAACTGTGTAAGAAAGAAAGGAGACGGGTGTGGTGGATTTGGGGAACCACTTCTGTACCTGAAGCAAGAGAAACCCCACGCTGGACTGGAATACTCAGAATATAATGGAAACGGAAGGGCTCTCAGCCATAAGGATGCCATCTTTAAACATCGGAAAATTAAGAGCTTGGTTCAGCCTTTTGTCTGTAACTACTGTGACAAGACCTTCTCCTTCAAGTCGCTGCTCGTTAGCCACAAGCGGATCCACACGGGCGAGAAGCCCTATGAGTGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055835_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.092
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=FE(90.3=100)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.7),PF0013017=C1_1=WD(100=15.1),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=7.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCAACCCAGAAAATGATGG
R:
ACTGCTAAGTAAGTCTGAATTGTACT
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types