HsaALTA0009752-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000136870 | ZNF189
Description
zinc finger protein 189 [Source:HGNC Symbol;Acc:HGNC:12980]
Coordinates
chr9:101398873-101400010:+
Coord C1 exon
chr9:101398873-101399189
Coord A exon
chr9:101399884-101399928
Coord C2 exon
chr9:101399929-101400010
Length
45 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CAGAAATCATACTATTTCAGGGG
3' ss Score
4.31
Exon sequences
Seq C1 exon
AAGGAGGAGGAACTGGCAGCGGGGAGGAGGCTCTAGCGAGGCCTGAAAGGCTGCGTAACCAGGCAGGAGTAGGGGTTGGGGTTCGGGGTTGGGGGACAGCCAGGGATCGCGTCTGATATGCTGTTGGGGTCGTGACCGTCTGGGGGCCGAGGCAGGCACTGGCCAGACCCAGCCAGGGATCCTCGTATTCGTCGAGCCTAATTTCCAGCAGCCGGGTAGGCCTCACCAGAGGCTCCTTTCCGTGAGGCCGCCCCCAATTCCTGCCCCTATTCTCTGCCTGGGAGATGGCTTCCCCGAGCCCCCCGCCGGAGTCGAAG
Seq A exon
GGGTTGCTGACATTTGAGGATGTGGCTGTGTTTTTTACCCAGGAG
Seq C2 exon
GAGTGGGATTATCTGGACCCAGCTCAGAGAAGCCTGTATAAAGATGTCATGATGGAGAATTATGGAAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136870-0-4,0-3,0-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.106
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(3.2=9.1)
A:
NA
C2:
PF0135222=KRAB=FE(90.3=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTAATTTCCAGCAGCCG
R:
AGCTGGGTCCAGATAATCCCA
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains