HsaINT1047319 @ hg38
Intron Retention
Gene
ENSG00000136870 | ZNF189
Description
zinc finger protein 189 [Source:HGNC Symbol;Acc:HGNC:12980]
Coordinates
chr9:101399028-101400010:+
Coord C1 exon
chr9:101399028-101399189
Coord A exon
chr9:101399190-101399883
Coord C2 exon
chr9:101399884-101400010
Length
694 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CAGAAATCATACTATTTCAGGGG
3' ss Score
4.31
Exon sequences
Seq C1 exon
GCACTGGCCAGACCCAGCCAGGGATCCTCGTATTCGTCGAGCCTAATTTCCAGCAGCCGGGTAGGCCTCACCAGAGGCTCCTTTCCGTGAGGCCGCCCCCAATTCCTGCCCCTATTCTCTGCCTGGGAGATGGCTTCCCCGAGCCCCCCGCCGGAGTCGAAG
Seq A exon
GTAAGTAAGCACCCCCCCGGGGATCCCGGTTGTCTCGCCGCTACCCCAGCTAGGCCGCACCACTGCTTTCTCCCCCAGGCCCCCCACCAACCTCCTGACCGCCTCTTTAGGGCCAGCGCCTTGCAAGGAACTCCCCACTAGTGCATTGGGGTGCGGTTCGCGAACAAACTGCCCACTGGCTCCCTTTTTTTTTTTCTTTTTCTAGAGAGACTTGATAAATCGGCCTGAGAAAATAAGTAATGCTCCAGACTAGCTCTCTCATTTGTGAGTTCTCCAGGTGAAGCACCATTTTTGACCTTCCCTTGTGTCTTCTGTTCCTGGCACAGTGCCTGGACCCCAAGGTACACGCTTAGAGAACCTCAAGGAATTGAATTGAATAGAGTCACAAGCCAGTGCAAATGGAAAATTGAAGTAGGCAATGAGGTGAGGGAAGCTTGGAGAGGCCTTGGGGCAGTTTACTAAAATTAAACTCTCAGGGCATAATAAATCAGAAAAGCCTTATCCGTAGGTCCTTTCTAGTCTGAGATGTCTGTCAGTTACAGTTCGTTCCCAGAATTGGGCAACATATGGAACTTTCAGTTATCATGTTCCTCCTAGCCTACTTGGCCACAATAAGTGATTGCCTCTGTCACTTTTAGTGGTAGAATTGTCCTTGAGACAACAGGAACTGACTACAGAAATCATACTATTTCAG
Seq C2 exon
GGGTTGCTGACATTTGAGGATGTGGCTGTGTTTTTTACCCAGGAGGAGTGGGATTATCTGGACCCAGCTCAGAGAAGCCTGTATAAAGATGTCATGATGGAGAATTATGGAAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136870:ENST00000339664:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCAGACCCAGCCAG
R:
CCAGTGAGACCAGGTTTCCAT
Band lengths:
286-980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains