HsaALTD1021716-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000136870 | ZNF189
Description
zinc finger protein 189 [Source:HGNC Symbol;Acc:HGNC:12980]
Coordinates
chr9:101399395-101400010:+
Coord C1 exon
chr9:101399395-101399453
Coord A exon
chr9:101399454-101399612
Coord C2 exon
chr9:101399926-101400010
Length
159 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGGCTGTGTTTTTTACCCAGGAG
3' ss Score
7.68
Exon sequences
Seq C1 exon
AGAGACTTGATAAATCGGCCTGAGAAAATAAGTAATGCTCCAGACTAGCTCTCTCATTT
Seq A exon
GTGAGTTCTCCAGGTGAAGCACCATTTTTGACCTTCCCTTGTGTCTTCTGTTCCTGGCACAGTGCCTGGACCCCAAGGTACACGCTTAGAGAACCTCAAGGAATTGAATTGAATAGAGTCACAAGCCAGTGCAAATGGAAAATTGAAGTAGGCAATGAG
Seq C2 exon
GAGGAGTGGGATTATCTGGACCCAGCTCAGAGAAGCCTGTATAAAGATGTCATGATGGAGAATTATGGAAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136870-1-3,2-3,3-3,4-3-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.134
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=FE(90.3=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTGATAAATCGGCCTGAGA
R:
CCAGTGAGACCAGGTTTCCAT
Band lengths:
142-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains