HsaALTA0009852-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000171469 | ZNF561
Description
zinc finger protein 561 [Source:HGNC Symbol;Acc:28684]
Coordinates
chr19:9730108-9731908:-
Coord C1 exon
chr19:9731838-9731908
Coord A exon
chr19:9730206-9730258
Coord C2 exon
chr19:9730108-9730205
Length
53 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTGATGATTGATATGAACAGGAC
3' ss Score
3.98
Exon sequences
Seq C1 exon
CTTTTCCGGCGCTGGCTCCTCTCCGTCAGTGCGGTTTCGCCTTTATGGTGGTGGAGTCTGCCCAGGCTGTG
Seq A exon
GACCGCAAATAACCCTGTACAAAGAGGAATGGAGATTGCCTCTATCCACCTAG
Seq C2 exon
ATTCATAAGCTGGCCTGAGGTGATCTTGGCATCAAGGAAGGGATGCACATCATCACACCATCAGCTTCAGAGAATGGCAGCCATTTATTTGTCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171469-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF080087=Viral_cys_rich=PU(7.5=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTCGCCTTTATGGTGGT
R:
CGGGACAAATAAATGGCTGCC
Band lengths:
136-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)