MmuALTA0020547-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000060510 | Zfp266
Description
zinc finger protein 266 [Source:MGI Symbol;Acc:MGI:1924769]
Coordinates
chr9:20311172-20312629:-
Coord C1 exon
chr9:20312463-20312629
Coord A exon
chr9:20311274-20311326
Coord C2 exon
chr9:20311172-20311273
Length
53 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTAATGATTGATGTGAACAGGAC
3' ss Score
5.35
Exon sequences
Seq C1 exon
GACTTCTAGATCTGTACAGAACAGGATATTTTCTGTGTCCTTCCCTGCTCTGCTCATGCCTACCACAGGAATAGGACTTCCTAATAATTTGCTGAAAGAATTAAAGAATAAGCCAGACCTGAAATAAACCAGTACCTCCAGTACCTCCAATAAATGAAATAGAAGAG
Seq A exon
GACTCCATATAACCCTGTATTAAGAGGAATGGAGATTGCCTCTGTCCACTTAG
Seq C2 exon
ATTCATAAGCTGTCCCGAAGTGATCTTGGCATCAGGGAAGGGAGTGTTCAGGCACATTTCACCATCAGCATCACGGGATGGCAGCCATTGATTTGTCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060510-5-7,5-6,5-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTCATGCCTACCACAG
R:
CAAGATCACTTCGGGACAGCT
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: