RnoALTA0045592-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000034037 | Zfp266
Description
zinc finger protein 266 [Source:RGD Symbol;Acc:1308643]
Coordinates
chr8:21523516-21524896:-
Coord C1 exon
chr8:21524796-21524896
Coord A exon
chr8:21523618-21523670
Coord C2 exon
chr8:21523516-21523617
Length
53 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TTAACGATTGATGTGAACAGGAC
3' ss Score
4.92
Exon sequences
Seq C1 exon
AGGAATAGGACTTCCTAATAATTTGCTGAAAGAATTAAAGAATAAGCCAGACCTGAGATAGACCAGTACCTCCAGTACCTCCAGTAAATGAAATAGAAGAG
Seq A exon
GACTCCATATAACCCTGTATTAAGAGGAATGGAGATTGCCTCTGTCCACTTAG
Seq C2 exon
ATTCATAAGCTGTCCCGAAGTGATCTTGGCCTCAGGGAAGGGAGTGTTCAGGCACATTTCACCATCAGCATCACGGGATGGCAGCCATTGACTTGTCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034037-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGACCTGAGATAGACCAGT
R:
CCCGTGATGCTGATGGTGAAA
Band lengths:
133-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]