HsaALTA1000726-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11647072-11651324:+
Coord C1 exon
chr17:11647072-11647198
Coord A exon
chr17:11650927-11651068
Coord C2 exon
chr17:11651069-11651324
Length
142 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTTTCCTTTTCTGAGACTAGATT
3' ss Score
2.51
Exon sequences
Seq C1 exon
GTATGAGACAAGACTTTATGAGGATTGGTGCCGGACAGTATCAGAGAAGTCACAGTACAATCTTTCCCAACCACTTCTAAAACGTGACCCAGAGACGAAGGAGATCACTATCAACTTTAACCCACAG
Seq A exon
ATTTAAGAAACTGATAGGAGCAGAACTTAAGAAAAGACCCAGAAGATCTTTGGGCCTCCTGGGATTGTCCAGTCTTTGACCAATGCTGCAGATTATTCATTATCACTGAACGACAGACACTTGTGTTGCTTCTTTTCTCCAG
Seq C2 exon
CTGATTTCAGTGCTGAAAGAAATGAGCTATCTTGAACCCAGAGAGATGAAACACATGCCTGAGACAGCAGCAGCCATGTTCTCCTCCAGGGATTTCTATCGGCAGCTTGTGGCTAATTTAGAGTTGATGGCAAATTGGTACAACAAGGTTATGAAAACTCTGCTGGAGGTGGAATTTCCATTAGTGGAGGAAGAGCTGCAAAATATTGATCTCCGCCTCAGAGCAGCAGAGGAGACTTTGAACTGGAAAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-31-25,31-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCCAGAGACGAAGGAGA
R:
TTTTGCAGCTCTTCCTCCACT
Band lengths:
247-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains