HsaALTA1000726-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11647072-11651324:+
Coord C1 exon
chr17:11647072-11647198
Coord A exon
NA
Coord C2 exon
chr17:11651069-11651324
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTGTTGCTTCTTTTCTCCAGCTG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GTATGAGACAAGACTTTATGAGGATTGGTGCCGGACAGTATCAGAGAAGTCACAGTACAATCTTTCCCAACCACTTCTAAAACGTGACCCAGAGACGAAGGAGATCACTATCAACTTTAACCCACAG
Seq A exon
NA
Seq C2 exon
CTGATTTCAGTGCTGAAAGAAATGAGCTATCTTGAACCCAGAGAGATGAAACACATGCCTGAGACAGCAGCAGCCATGTTCTCCTCCAGGGATTTCTATCGGCAGCTTGTGGCTAATTTAGAGTTGATGGCAAATTGGTACAACAAGGTTATGAAAACTCTGCTGGAGGTGGAATTTCCATTAGTGGAGGAAGAGCTGCAAAATATTGATCTCCGCCTCAGAGCAGCAGAGGAGACTTTGAACTGGAAAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-31-25,31-24-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(7.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(14.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCCAGAGACGAAGGAGA
R:
TTTTGCAGCTCTTCCTCCACT
Band lengths:
247-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains