HsaEX1011956 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11640270-11669794:+
Coord C1 exon
chr17:11640270-11640384
Coord A exon
chr17:11652761-11653002
Coord C2 exon
chr17:11669370-11669794
Length
242 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTTTTGGGGAACAGGCA
3' ss Score
4.64
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GGTTCTCCCCGGTGCACAAGAACATGCCCACCGTGGCTGGCGGCCTCCGCTGGGCACAGGAGCTGAGGCAGCGCATCCAGGGTCCTTTCAGCAACTTTGGACGCATCACACACCC
Seq A exon
GCATTTGCGATTATGTCACTGAAATCACCAGTAGTATTCATGATCTTGAACAAAGAATTCAGAAAACTAAAGACAATGTGGAAGAGATCCAAAACATCATGAAAACATGGGTGACTCCAATATTTAAGACAAAAGATGGAAAAAGGGAATCCCTTCTTTCTCTGGATGATCGGCATGATCGAATGGAAAAATATTACAATCTCATCAAGGAATCTGGCCTTAAGATCCACGCCCTTGTTCAG
Seq C2 exon
GTCGACCTGGACGGTATACCAGATTTGGCAAACATGCGGCGCACACTCATGGAGAGAGTCCAGAGAATGATGGGCCTCTGCTGTGGCTATCAGAGCACCTTCAGCCAGTATTCGTACCTCTATGTGGAGGACCGGAAGGAGGTTCTGGGTCAGTTTCTGCTGTACGGGCACATCCTCACTCCGGAAGAAATTGAAGACCATGTGGAAGATGGCATCCCAGAGAACCCTCCCCTCCTTTCTCAGTTTAAAGTGCAAATCGACTCCTATGAAACGCTCTATGAAGAGGTGTGCAGGCTGGAACCCATCAAGGTGTTTGACGGCTGGATGAAAATTGATATTCGACCCTTTAAGGCATCTCTGCTGAATATTATTAAGAGGTGGAGCCTCCTGTTCAAACAGCATCTTGTGGACCACGTCACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174_MULTIEX2-4/12=C1-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
PF083857=DHC_N1=PD(1.0=7.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCACAAGAACATGCCCA
R:
TCTTCCGGAGTGAGGATGTGC
Band lengths:
293-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains