HsaEX6021162 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11652761-11690436:+
Coord C1 exon
chr17:11652761-11653002
Coord A exon
chr17:11664833-11664968
Coord C2 exon
chr17:11689566-11690436
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTCTTCCTTTTATAGGAA
3' ss Score
13.42
5' ss Seq
CTGGTACTT
5' ss Score
4.74
Exon sequences
Seq C1 exon
GCATTTGCGATTATGTCACTGAAATCACCAGTAGTATTCATGATCTTGAACAAAGAATTCAGAAAACTAAAGACAATGTGGAAGAGATCCAAAACATCATGAAAACATGGGTGACTCCAATATTTAAGACAAAAGATGGAAAAAGGGAATCCCTTCTTTCTCTGGATGATCGGCATGATCGAATGGAAAAATATTACAATCTCATCAAGGAATCTGGCCTTAAGATCCACGCCCTTGTTCAG
Seq A exon
GAAAACCTGGGTCTATTTTCAGCAGACCCAACCTCCAATATCTGGAAGACTTATGTTAACTCTATTGACAATTTGTTGCTGAATGGATTCTTTCTTGCCATTGAGTGCTCCCTCAAGTATCTTCTGGAAAATACTG
Seq C2 exon
GTTTGATAGCATCCACCCTCATCAAATGCTGGATGCCAGGCACATCGAGATCCAGCAGATGGAATCCACTATGGCCTCCATTTCTGAGTCTGCCAGCTTATTTGAAGTCAATGTCCCTGACTATAAGCAGCTGAGGCAGTGCAGGAAGGAGGTCTGCCAGCTGAAGGAGCTCTGGGACACCATTGGAATGGTGACCTCCAGCATCCATGCCTGGGAGACCACACCCTGGAGGAATATCAACGTGGAAGCCATGGAGTTGGAGTGCAAACAGTTTGCCCGGCATATCCGAAACCTGGACAAGGAGGTCAGGGCCTGGGATGCATTCACAGGCCTGGAAAGCACTGTGTGGAACACGCTGAGCTCCCTGAGGGCAGTAGCTGAGCTGCAGAATCCAGCCATCCGGGAGCGGCACTGGAGGCAGCTGATGCAGGCCACCGGTGTGAGCTTCACTATGGACCAGGACACCACCCTAGCGCACCTGCTGCAGCTCCAGCTGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174_MULTIEX2-5/12=4-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(1.0=7.4)
A:
NO
C2:
PF083938=DHC_N2=PU(59.9=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATCTGGCCTTAAGATCCACG
R:
ATGGATGCTGGAGGTCACCAT
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains