MmuEX6086205 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66108390-66117650:-
Coord C1 exon
chr11:66117409-66117650
Coord A exon
chr11:66112252-66112387
Coord C2 exon
chr11:66108390-66108586
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTCTTTCTTCTGTAGGAA
3' ss Score
12.93
5' ss Seq
CTGGTACCT
5' ss Score
4.11
Exon sequences
Seq C1 exon
GCATTTGGGATTATGCTATGCAAATAACCAATAGCATTCATGACCTGGAACAAAGAATTCAGAAGACAAAAGACAATGTGGAAGAGATTCAAAACATCATGAAAACATGGGTGTCTCCAATATTCAAGAGAAAAGATGGGAAAAAAGAATGGCCCCTTTCTCTGGATGATCAGCAGGATCACATGGAAAAATACTACAGTCTCATCCAGGAATCTGGCCTTAAGATTCACGCTCTTGTTCAG
Seq A exon
GAAAACCTGGTTCTGTTTGCAGCAGACCCAGCATCCAGCATTTGGAAGTCTTACGTGAACTACATTGATTCCATGTTGTTGGATGGATTTTTTCTTGCCATTGAGTGTTCTCTCAAATATCTATTGGAAAACACTG
Seq C2 exon
AATGCAAGCCTGGACTCACCCCAGTATTTGAAGCACAGCTCAACCTTGTCACCCCAGAATTAGTTTTCCACCCCTCTCTGGACTCTGGGGTAAAGGGAGGCTTATATGACATTGTCCAGAGTCTTGTCACCAGAATTTTTGCTATGCCATCCCTCGTGCCACGGCTTTCCCCACACAGTGGCTCTCCTCACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752_MULTIEX5-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(1.0=7.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCCTTTCTCTGGATGAT
R:
CACGAGGGATGGCATAGCAAA
Band lengths:
251-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types