MmuEX6086206 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66095237-66117650:-
Coord C1 exon
chr11:66117409-66117650
Coord A exon
chr11:66108390-66108586
Coord C2 exon
chr11:66095237-66095459
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCTGATGCTTTGTTTTCCAGAAT
3' ss Score
8.99
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCATTTGGGATTATGCTATGCAAATAACCAATAGCATTCATGACCTGGAACAAAGAATTCAGAAGACAAAAGACAATGTGGAAGAGATTCAAAACATCATGAAAACATGGGTGTCTCCAATATTCAAGAGAAAAGATGGGAAAAAAGAATGGCCCCTTTCTCTGGATGATCAGCAGGATCACATGGAAAAATACTACAGTCTCATCCAGGAATCTGGCCTTAAGATTCACGCTCTTGTTCAG
Seq A exon
AATGCAAGCCTGGACTCACCCCAGTATTTGAAGCACAGCTCAACCTTGTCACCCCAGAATTAGTTTTCCACCCCTCTCTGGACTCTGGGGTAAAGGGAGGCTTATATGACATTGTCCAGAGTCTTGTCACCAGAATTTTTGCTATGCCATCCCTCGTGCCACGGCTTTCCCCACACAGTGGCTCTCCTCACTATCAG
Seq C2 exon
CCTGTCTGACCTTGACTCATTCATAAGGAGCACCGAGAGTGGTTTGCTCAAGAGGGTGGAGAAAGGAGATTTCCAAGGATTGGTTGAGATCATGGGACATCTTGTCACCCTTAAAGAACGGCAGAGCAGCACCGATGACATGTTTGAGCCCCTGAAGCAAACGATTGAACTGCTGAAGTCCTACGAACAAGAGCTGCCAGAAACCGTGTTTAAGCAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752_MULTIEX5-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(1.0=7.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCCTTTCTCTGGATGAT
R:
GGGCTCAAACATGTCATCGGT
Band lengths:
244-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types