GgaEX6015789 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1052429-1054524:+
Coord C1 exon
chr18:1052429-1052564
Coord A exon
chr18:1053823-1054019
Coord C2 exon
chr18:1054100-1054524
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTTCTTCCTTACCAGATC
3' ss Score
11.4
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GAAAATCAGAGCCTCTTAACTGCAGACCCAGCATCTGATGTTTGGAAGGCTTACGTGGATTATGTAGATGAGATAATCCTGGATGGATTCTTTACTGCCATTGAGTGCTCACTGAAGTACCTCCTGGAAAACACAG
Seq A exon
ATCCCAAGGCAGGGCTTGCCCCCTTGTTTGAAGTGCAGCTGGATTTAGTGATCCCAGATTTGATTTTTCGTCCCTCCCTGGACCCCGGCACAAATGATGGCTTCTATGACATGGTGGAAAGCCTTCTCAATGACATCTACCGCATCTCCTCGCTGGTGCCCAGGCTGGCCAGGCACAGTGGCTTCCCCCACTACCAG
Seq C2 exon
GCTGACATGGAGGACATGGCTGACCTGGCTGACATGCGCCACGACCTGCTGGGCCGCGTGCAGGCTGTGATGGCGGCCTGTTGTGAATACCGCAGCAGCTTCGATCGCTACTCTTACCTCTATGGGGATGACCGAAAGGAATTCTTCCGCCAGTTCCTTCTCTATGGGCACATCCTCACCGCTGCAGAAGTCGAGGCTCATGCAGAGGATGGGGTCCCTGAGACATCCCCCACCCTTGAGCAGTTCAGGGAGCAGATTGACTCCTATGAGAAGATTTATGAGGAGGTGAATCGCATCGAGCCCATCAGCATCTTCCACAGCTGGATGAAGGTCGACGCGCGGCCTTTCAAGGCGTCCTTGCTGAATGTGGTGAAAAGGTGGAGTTTGTTGTTCAAGCAGCATCTCATTGACCACGTCACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCATTGAGTGCTCACTG
R:
CATGAGCCTCGACTTCTGCAG
Band lengths:
245-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]