DreEX6067095 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:182022-183291:-
Coord C1 exon
chr12:183156-183291
Coord A exon
chr12:182848-183044
Coord C2 exon
chr12:182022-182446
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCCCTGATGTCTCGATACAGATG
3' ss Score
8.39
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAAAACTTACACCTTTTCAAAGCAGACCCGTCGTCTCCACAGTGGAAGATTTATGTGGATTATGTAGATGAAATGGTCATCGACGGCTTCTTCAATGCTATCGAGAGCACGCTCAAGTTCTTCATGGAAAATACAG
Seq A exon
ATGCAGATGCTGGATTAGAGCCGCTGTTTGAGGCTCAGCTGCGCCTGCAGGTTCCTGACCTGGTGTTTCAGCCATCGCTGGAGCTCAGATCCTCAGACAGCCTCCATGAGCTGGTGGAGGGTTTGCTCAGAGACGTCTTTAAGACCTCCACTCTGGTGCCACGTCTGGCCAAGCACAGCGGCTTCCCAGACTATCAG
Seq C2 exon
GATGATATGGAGGACATGGAGGAGCTGGTGCAGACCCGTCAGCATGTGATGCAGCGAGTGAAGAGGATCATGATGAAGTGCTGCGAGTACCGGAACTCTCTGGAGCGCTACGCTTACCTGTACGTGGACGACCGCAAAGAGTTCATGCGTCAGTTCCTGCTGTACGGCCATGTGCTGACGAGCCAGGAGATCGAGGAGCACGCTGAACACGGCGTCCCAGAATCCCCTCCGACTCTAGAGCGCTTCCGGCAGCAGGTAGACTCCTACGAGCGTCTGTATGAGGAGCTGCAGCGGATGGAGCCTGTGATGGTGTTCGAGCGCTGGATGAGGGTGGACGCTCGCGCCTTCAAGAGCGCGCTGCTCAACACCGTCAAGAAGTGGAGCTTGATGTTCAAACAGCACCTCATCGACCACGTCACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAAAGCAGACCCGTCGTC
R:
GTCGTCCACGTACAGGTAAGC
Band lengths:
254-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]