HsaEX6021161 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11568150-11573111:+
Coord C1 exon
chr17:11568150-11568285
Coord A exon
chr17:11572381-11572577
Coord C2 exon
chr17:11572687-11573111
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTGTGTTTTTCAGAGT
3' ss Score
11.75
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAAAACCTGGGTCTATTTTCAGCAGACCCAACCTCCAATATCTGGAAGACTTATGTTAACTCTATTGACAATTTGTTGCTGAATGGATTCTTTCTTGCCATTGAGTGCTCCCTCAAGTATCTTCTGGAAAATACTG
Seq A exon
AGTGTAAGGCAGGACTTACCCCAATATTTGAAGCACAACTGAGTCTAGCCATCCCAGAGCTAGTTTTCTATCCGTCTCTGGAGTCTGGAGTGAAGGGGGGTTTCTGTGACATTGTTGAGGGTCTCATCACCAGCATTTTTAGGATACCATCTCTGGTGCCACGGCTTTCCCCACAAAATGGCTCTCCTCACTATCAG
Seq C2 exon
GTCGACCTGGACGGTATACCAGATTTGGCAAACATGCGGCGCACACTCATGGAGAGAGTCCAGAGAATGATGGGCCTCTGCTGTGGCTATCAGAGCACCTTCAGCCAGTATTCGTACCTCTATGTGGAGGACCGGAAGGAGGTTCTGGGTCAGTTTCTGCTGTACGGGCACATCCTCACTCCGGAAGAAATTGAAGACCATGTGGAAGATGGCATCCCAGAGAACCCTCCCCTCCTTTCTCAGTTTAAAGTGCAAATCGACTCCTATGAAACGCTCTATGAAGAGGTGTGCAGGCTGGAACCCATCAAGGTGTTTGACGGCTGGATGAAAATTGATATTCGACCCTTTAAGGCATCTCTGCTGAATATTATTAAGAGGTGGAGCCTCCTGTTCAAACAGCATCTTGTGGACCACGTCACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTGAGTGCTCCCTCAAG
R:
GGGATGCCATCTTCCACATGG
Band lengths:
258-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)