HsaEX6021162 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11556078-11572577:+
Coord C1 exon
chr17:11556078-11556319
Coord A exon
chr17:11568150-11568285
Coord C2 exon
chr17:11572381-11572577
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTCTTCCTTTTATAGGAA
3' ss Score
13.42
5' ss Seq
CTGGTACTT
5' ss Score
4.74
Exon sequences
Seq C1 exon
GCATTTGCGATTATGTCACTGAAATCACCAGTAGTATTCATGATCTTGAACAAAGAATTCAGAAAACTAAAGACAATGTGGAAGAGATCCAAAACATCATGAAAACATGGGTGACTCCAATATTTAAGACAAAAGATGGAAAAAGGGAATCCCTTCTTTCTCTGGATGATCGGCATGATCGAATGGAAAAATATTACAATCTCATCAAGGAATCTGGCCTTAAGATCCACGCCCTTGTTCAG
Seq A exon
GAAAACCTGGGTCTATTTTCAGCAGACCCAACCTCCAATATCTGGAAGACTTATGTTAACTCTATTGACAATTTGTTGCTGAATGGATTCTTTCTTGCCATTGAGTGCTCCCTCAAGTATCTTCTGGAAAATACTG
Seq C2 exon
AGTGTAAGGCAGGACTTACCCCAATATTTGAAGCACAACTGAGTCTAGCCATCCCAGAGCTAGTTTTCTATCCGTCTCTGGAGTCTGGAGTGAAGGGGGGTTTCTGTGACATTGTTGAGGGTCTCATCACCAGCATTTTTAGGATACCATCTCTGGTGCCACGGCTTTCCCCACAAAATGGCTCTCCTCACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(1.0=7.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTGGATGATCGGCATGA
R:
CGTGGCACCAGAGATGGTATC
Band lengths:
248-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)