GgaEX1020254 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1050294-1054019:+
Coord C1 exon
chr18:1050294-1050535
Coord A exon
chr18:1052429-1052564
Coord C2 exon
chr18:1053823-1054019
Length
136 bp
Sequences
Splice sites
3' ss Seq
ATGTCTTTGTTTTCTTCCAGGAA
3' ss Score
12.19
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GTGTCTGGGACCACATTTCCATGGTGATGGATGATGTCCATGACCTCGAGCAGAGGATACAGAAAGCCAAAAGCAACGTTGAGGAGATCCAGAGCTTTGTGCGGTCATGGGGGTCACCCATATTTAAGAGGAAAGATGGGAAAAAGGAATCACTGCTGAACCTGGAGGACTGCCAGGACCGTCTGGAGAAGAGTTACAGCCTGGTCCAGGAGTCAGGGCTGAGGATTCATTCGCTGATGAAG
Seq A exon
GAAAATCAGAGCCTCTTAACTGCAGACCCAGCATCTGATGTTTGGAAGGCTTACGTGGATTATGTAGATGAGATAATCCTGGATGGATTCTTTACTGCCATTGAGTGCTCACTGAAGTACCTCCTGGAAAACACAG
Seq C2 exon
ATCCCAAGGCAGGGCTTGCCCCCTTGTTTGAAGTGCAGCTGGATTTAGTGATCCCAGATTTGATTTTTCGTCCCTCCCTGGACCCCGGCACAAATGATGGCTTCTATGACATGGTGGAAAGCCTTCTCAATGACATCTACCGCATCTCCTCGCTGGTGCCCAGGCTGGCCAGGCACAGTGGCTTCCCCCACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(3.2=7.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCATGACCTCGAGCAGA
R:
AGCTGCACTTCAAACAAGGGG
Band lengths:
249-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]