DreEX6067094 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:182848-183941:-
Coord C1 exon
chr12:183700-183941
Coord A exon
chr12:183156-183291
Coord C2 exon
chr12:182848-183044
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTATTTTGTTCTTGTTACAGGAA
3' ss Score
10.12
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGATCTGGGAGTACATCCAGGACGTGCGTGAGGCGGTGAGTGACCTGGAGCAGCGTCTGCGGAGAACTAAAGACAACGTGGAGGAGATGCAGAGCCTGATGAAGAGCTGGGCCACACCGCTGCACGACAGGAAGGAAGGCAAGAAGGAGATGCTGCTGAACCTGGAGGAGCGGAGCGAGCGTGTGGAGCGCACATACAGCCACATCCGCTCTTCAGGAGCCAGAATACATCTCCTACTGCAG
Seq A exon
GAAAACTTACACCTTTTCAAAGCAGACCCGTCGTCTCCACAGTGGAAGATTTATGTGGATTATGTAGATGAAATGGTCATCGACGGCTTCTTCAATGCTATCGAGAGCACGCTCAAGTTCTTCATGGAAAATACAG
Seq C2 exon
ATGCAGATGCTGGATTAGAGCCGCTGTTTGAGGCTCAGCTGCGCCTGCAGGTTCCTGACCTGGTGTTTCAGCCATCGCTGGAGCTCAGATCCTCAGACAGCCTCCATGAGCTGGTGGAGGGTTTGCTCAGAGACGTCTTTAAGACCTCCACTCTGGTGCCACGTCTGGCCAAGCACAGCGGCTTCCCAGACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(1.0=7.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCCTGATGAAGAGCTG
R:
TCTGAGGATCTGAGCTCCAGC
Band lengths:
251-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]