RnoEX0028663 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52626092-52657893:-
Coord C1 exon
chr10:52657652-52657893
Coord A exon
chr10:52647255-52647390
Coord C2 exon
chr10:52626092-52626314
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTCTTTTTTCTGTAGGAA
3' ss Score
12.16
5' ss Seq
CTGGTACCT
5' ss Score
4.11
Exon sequences
Seq C1 exon
GCATTTGGGATTATGCCATGCAAATAACCAATAGCATTCATGACCTGGAACGAAGAATTCAGAAGACAAAAGACAACGTGGAAGAGATTCAAACCATCATGAAAACATGGGTGTCTCCAATATTTAAGAGAAAGGATGGGAAAAAAGAATGCCCCCTTTCTCTGGATGATCAGCAGGATCTCCTGGAAAAATACTACAGTCTCATCAGGGAATCAGGCCTTAAGATTCATGCTCTTGTTCAG
Seq A exon
GAAAACCTGGTTCTATTTGCAGCAGACCCAGCATCCAGTACCTGGAAGTCTTACGTGGGCCACATTGACTCGATGTTGTTGGATGGATTCTTTCTTGCCATTGAGTGTTCTCTCAAGTATCTACTAGAAAACACTG
Seq C2 exon
CCTGGCTGACCTTGACTCATTCATAAAGAGCACTGAGTGTGGTTTGCTCAAGAGGGTGGAAAAAGGAGATTTCCAGGGATTGGTTGAGATCATGGGACACCTTGTCACCCTTAAAGAACGGCAGAGCAGCACCGATGACATGTTTGAGCCCCTGAAGCAAACGATTGAACTGCTGAAGTCCTACGAACAAGAGCTGCCTGAAACTGTGTTTAAGCAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX1-2/4=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(1.0=7.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCCTTTCTCTGGATGAT
R:
GGGCTCAAACATGTCATCGGT
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]