RnoEX0028662 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52647255-52659207:-
Coord C1 exon
chr10:52658952-52659207
Coord A exon
chr10:52657652-52657893
Coord C2 exon
chr10:52647255-52647390
Length
242 bp
Sequences
Splice sites
3' ss Seq
CTATTTCTTTTGGGGAGCAGGCA
3' ss Score
1.93
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTGATTTCAGTGTTGAAAGAAATGAACTATCTTCAGCCCACTGAGGTGAAACCGATCCCCGAGACCGCAGCAGCCATGTTCTCCTCCAGGGAATTCTATCGCCAGCTTGTGGCCAACTTGGAGTTGATGGCAAATTGGTACAACAAGGTTATAACAACTCTGCTGGAGGTGGAATTTCCACTAGTGGAGGAAGAACTGCAAAATATTGATCTCCGTCTGAGAGCTGCAGAGGAGACTCTGAGCTGGAAAACAGAAG
Seq A exon
GCATTTGGGATTATGCCATGCAAATAACCAATAGCATTCATGACCTGGAACGAAGAATTCAGAAGACAAAAGACAACGTGGAAGAGATTCAAACCATCATGAAAACATGGGTGTCTCCAATATTTAAGAGAAAGGATGGGAAAAAAGAATGCCCCCTTTCTCTGGATGATCAGCAGGATCTCCTGGAAAAATACTACAGTCTCATCAGGGAATCAGGCCTTAAGATTCATGCTCTTGTTCAG
Seq C2 exon
GAAAACCTGGTTCTATTTGCAGCAGACCCAGCATCCAGTACCTGGAAGTCTTACGTGGGCCACATTGACTCGATGTTGTTGGATGGATTCTTTCTTGCCATTGAGTGTTCTCTCAAGTATCTACTAGAAAACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(14.6=100)
A:
PF083857=DHC_N1=PD(1.0=7.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAGGTGAAACCGATCCC
R:
AACATCGAGTCAATGTGGCCC
Band lengths:
295-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]