DreEX6040441 @ danRer10
Exon Skipping
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19553254-19554242:-
Coord C1 exon
chr16:19554138-19554242
Coord A exon
chr16:19553661-19554056
Coord C2 exon
chr16:19553254-19553586
Length
396 bp
Sequences
Splice sites
3' ss Seq
TTGTGCCTGATTTCCCTTAGAAA
3' ss Score
8.23
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
CTGATTGCTGTGCTCAAGGACGTGAAGCATCTGAAAATGTTTAATCAGATGAACATCCCTTCCGCTGCTATGAAGGTGTATGAAAACAGGCAGATATTCTTTGAG
Seq A exon
AAACTTGGGAGCCTACATTTATTGGTGGAGTGGTACAATAAGGTGAAACAGACGACTCTTGAAGTGGAGGCTCCTCTTCTAAAAGAAGAGATGAAGACCATTGACCAGCAAATCCATCGAGCAGAAACTGAGCTTACATGGCAAACTGAGAACAGCTGGAACTACATCTGCATGCTTAAGCACACCGTCTATCAGCTGGAAAGAAGACTTCAGAAAACTAAAGACAACATTGAGATGATAAAAGCTCAGATGAAAGGATGGAGCAAACATCTGACATTTTGCAGAAAAGATCACAAGAAAGACATGGTACTACAACTAGAAGATAAAGCTACAATAGTAGCACAAAGTTACAGAAACATCAGGAAAGATGCAGAAATTATCCATAATTTGTTACAG
Seq C2 exon
GAAAACATAATGTTTTTTGAGGCCGATAGTTCATCAGATGAATGGAAAGCCTACTTGGAATATGTAGATGATATGGTGGTGGAAGGATTTTTCAAAGTGATCTCAACCTCTCTGGAGTTTTTCATTGAGAACATGGGGGGGTCAGTGAGGCAGGCTCCCTTGTTCGAGGCTCAGATGCTACTGATGGGATCTGAGATTCAATTCAAACCATCTCTTGATCGAGATGGTGGTGATGGACTTTATGAACTGGTGGAAGAATTACTTGGTGATGTGTTCAAGATGTCTGCTCAGGTCAAGAGAGTGGCACCACACCTCATTGTGGAGGACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384-'7-12,'7-11,13-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(5.9=100)
A:
PF083857=DHC_N1=PD(9.6=42.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]