RnoEX0028665 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52626092-52637511:-
Coord C1 exon
chr10:52637315-52637511
Coord A exon
chr10:52636800-52637224
Coord C2 exon
chr10:52626092-52626314
Length
425 bp
Sequences
Splice sites
3' ss Seq
CCATTGTCTCACTCCCCCAGGGT
3' ss Score
10.33
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AGTGTAAGCCTGGACTCACTCCAATATTTGAAGCACAGCTCAACCTTGTCACCCCAGAATTAGTTTTCTACCCCTCCCTGGACTCAGGGGTAAAGGGAGGCTTATATGACATTGTCCAGAGTCTTGTCACCAGCATCTTTGCTGTGCCATCCCTGGTGCCCCGGCTTTCCCCACACAGTGGCTCTCCTCACTATCAG
Seq A exon
GGTGACCTAGAGGAAATGGCTGACTTAGCCAGCCTTCGGAGCTTGCTCCTGGAGAGGGTGCAGACTATGATGACCCTCTGCTGTAGCTATCGGAATACCCTCAGCCAGTATTCTTATCTGTATGTGGAGGATAGGAAGGAGGCCCTTGGCCAGTTTCTGCTCTATGGGCATGTCCTCACACCTGAGGAGATAGAAGCCCATGTCGAAGATGGCATCCCAGAGAGTCCGCCCCTCCTCCATCACTTCAAAGACCAGATAGACTCCTATGAAAAGCTATATGAAGATGTGGTCAGCCTGGAACCCAGCAAGGTGTTTGACGGCTGGATGCGAGTGGATGTGAGACCCTTCAAGGCATCTCTGCTGAACACAATAAAGAAGTGGAGCCTCATGTTCAAGCAACATCTTGTTGACTTTGTCACTAACAG
Seq C2 exon
CCTGGCTGACCTTGACTCATTCATAAAGAGCACTGAGTGTGGTTTGCTCAAGAGGGTGGAAAAAGGAGATTTCCAGGGATTGGTTGAGATCATGGGACACCTTGTCACCCTTAAAGAACGGCAGAGCAGCACCGATGACATGTTTGAGCCCCTGAAGCAAACGATTGAACTGCTGAAGTCCTACGAACAAGAGCTGCCTGAAACTGTGTTTAAGCAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAAGCCTGGACTCACTCC
R:
GGGCTCAAACATGTCATCGGT
Band lengths:
347-772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]