DreEX6020653 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10439208-10442924:-
Coord C1 exon
chr6:10442595-10442924
Coord A exon
chr6:10439920-10440174
Coord C2 exon
chr6:10439208-10439377
Length
255 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCATTTTTTTTTTAGGAG
3' ss Score
10.32
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAGAATGCTGAGCTTCTTGGTGCTGATTTGGACTCAGAGGCTTGGCAGTCTTACACAGAATACGTGGACAGACACATTCTCACTGGCTTCTGCAGCGCTGTGCGATGCTCCCTGCAGTATTTAGTTGAGAACACGGATGCGGCGCTCAGTATCGCTCCCCTGTTTGAAGTACAGCTCACCCTGACCACAGACATGATCTTTCACCCCTCGCTCAACCTCTCCAGGAAAGGCAACTTCTATGACATCATTGACCAGATGGTGTCAGACATTTTTAAAATGGCTTCCTTCATCAAAAGAGTAGCCAAGAGCAAACAGTCAGAGACTTACAAG
Seq A exon
GAGGATGTAGATCAGATACCTGAGCTAGTGGAGTTGGCTCAGCTGGTGCGATATCGTGCTCGCGGAGCCATTGCTAAGGTCAAAGAATTCCAGCATTCCTTCGATTCCTACCGTTACCTTTGGACTGGAGACAGGGCGGAGTTTATGAGGCAGTTTCTGCTCTATGGACACGCCCTCTCTGCTGAAGAGGCGGAGCTTTATGCAGATTATGAGCTACCTAAGAATCCACCCAAACTGCAGAACTTCAGAGAGCAG
Seq C2 exon
ATCAGTGAGTTTGAGGATCTTTACGAGAAGGTGCGTGTGTTAGAGGAGAAGAGAGTGTTCTGTGGCTGGTGTCAGGTGGACATAAACCCTTTTAAAAGATCTCTGATGAACATCATTAAGAAGTGGAGCTGGATGTTTAAGGAACACTTACTCAACCACGTTAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCTCACTGGCTTCTGCA
R:
TCTCCTCTAACACACGCACCT
Band lengths:
306-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]