MmuEX6083408 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119365230-119366255:-
Coord C1 exon
chr12:119365923-119366255
Coord A exon
chr12:119365483-119365734
Coord C2 exon
chr12:119365230-119365399
Length
252 bp
Sequences
Splice sites
3' ss Seq
TTTGGTTTCCTTTCATTTAGAAC
3' ss Score
8.16
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
GAGAACCGGAAGCTCTTCAGAGCTGATCCTTCCCTGGATTCCTGGAAAATTTATGTGGAATTCATTGATGACATTGTGGTGGAAGGCTTTTTTCAGGCCATCTTGCATGACCTGGACTTCTTCCTGAGGAACACAGAGAAACAGTTAAAACCCACACCATTTTTTCAAGCACAAATGCTCTTAATGCCCCCAGAGATTGTGTTCAAGCCTCCTTTAGAAAAAGAGGCTGGGGATGGCTTCTACGATCTGGTGGAGGAAATGTTGTGTGGCAGCTTCAGAGTGTCTGCCCAGATGGGGCGCGTGGCAGCACACCTGGACATCGCAGACTACCAG
Seq A exon
AACGATATGGATAACATGTTAGGCCTGGCGGAGGTCCGGCAGGAGATCATGAATAGAGTTGCTGATGTCATCAACAAAGTCTTAGAGTTCAGAAGTTCTCTGGAGACCTACTCTTACCTCTGGGTGGATGACCGGGTAGAGATTCTAAGGCAGTTTCTCCTGTACGGCCATGCTGTGCCATCTGAGGAAATGGATGCTCCTGCAAGTGAAGACATCCTGCAACCACCAACACTAGAACAATTCAAAGAACAG
Seq C2 exon
ATTGACATTTACGAGGCTTTGTATATTCAGATGAGCAAGTTTGACGACTTCCGAGTATTTAACAGTTGGTTCAAGGTAGACATGAGACCTTTTAAGTTGAGCTTGCTCAACGTGATCAAGAAGTGGAGTTGGATGTTTCAAGAGCATCTGCTAAGATTTGTCGTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCCATCTTGCATGACCT
R:
TCGGAAGTCGTCAAACTTGCT
Band lengths:
295-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: