BtaEX6026635 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30480366-30482062:+
Coord C1 exon
chr4:30480366-30480698
Coord A exon
chr4:30481554-30481808
Coord C2 exon
chr4:30481893-30482062
Length
255 bp
Sequences
Splice sites
3' ss Seq
TTGGCTCTCCTGTTGTTTAGAGT
3' ss Score
6.27
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
GAAAATAGGAAGCTATTCAGAGCCAATCCTGCTCTGGATGCCTGGAAGATTTATGTAGAATTCATTGATGACATCGTGGTGGAAGGCTTTTTTCAAGCAATAATGCATGACTTAGACTTCTTCCTGAAGAACACAGAGAAACAATTGAAACCTGCACCATTTTTTCAAGCACAGATGATCTTAATGCCCCCAGAGATTCTGTTTAAGCCTTCTTTAGAAAGAGAGGCTGGAGATGGCTTCTATGATCTGGTGGAAGAAATGCTGTGCAGTAGTTTCAGAATGTCTGCCCAGATGAAGCGAGTAGCAGCACATCTGGAAACAGAAAACTACCAG
Seq A exon
AGTGATGTGGACAACATGCTGGGCCTGGCAGAAGGTAGGCAGGAGATCATGAGGAGAGTAGCAGACGTTATCAGCAAAGTCTTGGACTTCAGAAACACCCTGGACACGTATGCTTACCTCTGGGTAGAAGACCGAGCCGAGTTCATGAAGCACTTCCTTCTATATGGCCCTACTGTGTCGGCTGAGGAGATGGAGCCTCATGTGAATGAAGAGGTCCCTGAACAATCACCAACACTTGAGCAGTTCAAAGAACAG
Seq C2 exon
ATTGACATTTATGAGGCCCTGTATGTTCAGATGAGCAAGTTTGATGACTTCAGGGTGTTTGATAGTTGGTTCAAGGTGGACATGAAGCCTTTTAAAGTGAGCTTGCTGAACATCATCAGGAAATGGAGCTGGATGTTTCAGGAGCATCTTTTGAGATTTGTCATTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.153 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCGTGGTGGAAGGCTTT
R:
GCTCATCTGAACATACAGGGCC
Band lengths:
300-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]