DreEX6040443 @ danRer10
Exon Skipping
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19549932-19553586:-
Coord C1 exon
chr16:19553254-19553586
Coord A exon
chr16:19551502-19551756
Coord C2 exon
chr16:19549932-19550101
Length
255 bp
Sequences
Splice sites
3' ss Seq
TTATTTTATGCATCATTTAGGCA
3' ss Score
5.86
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAAAACATAATGTTTTTTGAGGCCGATAGTTCATCAGATGAATGGAAAGCCTACTTGGAATATGTAGATGATATGGTGGTGGAAGGATTTTTCAAAGTGATCTCAACCTCTCTGGAGTTTTTCATTGAGAACATGGGGGGGTCAGTGAGGCAGGCTCCCTTGTTCGAGGCTCAGATGCTACTGATGGGATCTGAGATTCAATTCAAACCATCTCTTGATCGAGATGGTGGTGATGGACTTTATGAACTGGTGGAAGAATTACTTGGTGATGTGTTCAAGATGTCTGCTCAGGTCAAGAGAGTGGCACCACACCTCATTGTGGAGGACTACCAG
Seq A exon
GCAGATGTTGAGGACATGTTGGATCTCTTAGACCTTCGTCAGGAAATAATGGAGAAAGTTGAAGAAGTCCTGCAGAAAGCCTTACAATACCAGGACACATTTAACCGCTACAGCCCACTGTGGCTTGATGACAGGGCTGAATTTCTTAGGCAGTTCCTACTTTATGGTCATGTGCTGACAGCTGAAGAGGTGGAAGCCTATGGAGAGGATGCTTTTCCGGAAAACCCTCCAACCACAGCGCAATTCAAAAAGCAG
Seq C2 exon
ATGAATCATTACGAAGAAGTGCACAGAGAAGTCAGCCATTTGGAGGACTGGCAGGTTTTTGACGGTTGGTTTAGAGTGGATATCCGATCGTTCAAAATGAGTCTTTTAAACATTATCAAAAAATGGAGCTGGATGTTTAAGGAGCACCTGATGTCTTTTGTTACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384-'7-24,'7-13,15-24=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.141 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]