RnoEX6030063 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146041017-146042042:-
Coord C1 exon
chr6:146041710-146042042
Coord A exon
chr6:146041270-146041521
Coord C2 exon
chr6:146041017-146041186
Length
252 bp
Sequences
Splice sites
3' ss Seq
TTTGGTTTCCTTTCGTTTAGAAT
3' ss Score
7.49
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
GAGAACCGGAAGCTCTTCAGAGCTGATCCTTCCCTGGATTCCTGGAAAATTTATGTGGAATTCATCGATGACATTGTGGTGGAAGGCTTTTTTCAGACCATCTTGCATGACCTGGACTTCTTCCTGAGGAACACAGAGAAACAGTTAAAACCCGCGCCATTTTTTCAAGCACAAATGCTCTTAATGCCCCCAGAGATTGTGTTCAAGCCCCCTTTAGAAAGAGAGGCTGGGGATGGCTTCTACAATCTGGTGGAGGCAATGTTGTGTGGCAGCTTCAAGGTGTCTGCCCAGATGGGGCGTGTGGCGGCACACCTGGACATCCCCGACTACCAG
Seq A exon
AATGATATGGATAACATGTTAGGCCTGGCAGAGGTCCGGCAGGAGATAATGAATAGAGTTGCTGATGTCATCGACAAAGTTTTGGAGTTCAGAAGTTCTCTGGAGACCTACTCTTACCTGTGGGTAGATGACCGAGTAGAGATTCTGAGGCAGTTCCTCCTGTATGGCCATGCTGTACCATCTGAGGAAATCGATGCTCCTGCAGGCGAGGACATCCTGCAGTCACCAACACTAGAACAGTTCAAAGAACAG
Seq C2 exon
ATCGACATTTATGAAGCTTTGTATGTTCAGATGAGCAAGTTTGATGACTTCCGAGTGTTTAACAGTTGGTTCAAGATAGACATGAGACCTTTCAAGTTGAGCATGCTCAACGTGATCAAGAAGTGGAGCTGGATGTTTCAAGAGCATCTGCTAAGATTTGTCGTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.012 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTTAATGCCCCCAGAGA
R:
GCTCTTGAAACATCCAGCTCCA
Band lengths:
303-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]