HsaEX6007415 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21639405-21640797:+
Coord C1 exon
chr7:21639405-21639737
Coord A exon
chr7:21640294-21640548
Coord C2 exon
chr7:21640628-21640797
Length
255 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTCCTCTCATTTAGAAT
3' ss Score
10.5
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
GAAAATAGGAAGCTCTTCAAAGCCAATCCCTCTCTGGATACCTGGAAAATTTATGTAGAATTCATTGACGACATTGTGGTGGAAGGCTTTTTTCAGGCTATAATGCACGACTTAGACTTCTTTCTGAAGAATACAGAGAAACAATTGAAACCGGCACCGTTTTTTCAAGCACAAATGATCTTGTTGCCTCCTGAGATTGTGTTTAAACCTTCCCTAGACAGAGAGGCTGGGGATGGCTTCTATGATCTTGTAGAAGAAATGTTATGCAATAGTTTTAGAATGTCTGCCCAGATGAACCGAATAGCAACACACCTGGAAATTAAAAATTATCAG
Seq A exon
AATGATATGGATAACATGTTAGGCCTGGCAGAGGTCAGGCAGGAGATCATGAACAGAGTGGTGAATGTCATCAACAAAGTCTTAGATTTCAGAAACACCCTGGAGACCCACACTTACCTCTGGGTGGATGATCGAGCTGAGTTTATGAAGCATTTTCTCTTGTATGGCCATGCTGTGTCTTCCGATGAAATGGATGCTCATGCAAATGAAGAAATTCCCGAACAACCACCAACTCTTGAGCAATTCAAAGAACAG
Seq C2 exon
ATTGACATTTATGAAGCTTTGTATGTTCAAATGAGCAAATTTGAGGACTTTAGAGTGTTTGATAGTTGGTTCAAGGTGGACATGAAGCCTTTCAAAGTGAGCTTGTTAACCATAATTAAGAAATGGAGCTGGATGTTTCAGGAGCATCTTTTGAGATTTGTCATTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.141 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCCTCCTGAGATTGTGT
R:
GCTCCTGAAACATCCAGCTCC
Band lengths:
297-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)