DreEX6067096 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:181338-183044:-
Coord C1 exon
chr12:182848-183044
Coord A exon
chr12:182022-182446
Coord C2 exon
chr12:181338-181560
Length
425 bp
Sequences
Splice sites
3' ss Seq
TTGTGGTCTTACTTCATCAGGAT
3' ss Score
7.71
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
ATGCAGATGCTGGATTAGAGCCGCTGTTTGAGGCTCAGCTGCGCCTGCAGGTTCCTGACCTGGTGTTTCAGCCATCGCTGGAGCTCAGATCCTCAGACAGCCTCCATGAGCTGGTGGAGGGTTTGCTCAGAGACGTCTTTAAGACCTCCACTCTGGTGCCACGTCTGGCCAAGCACAGCGGCTTCCCAGACTATCAG
Seq A exon
GATGATATGGAGGACATGGAGGAGCTGGTGCAGACCCGTCAGCATGTGATGCAGCGAGTGAAGAGGATCATGATGAAGTGCTGCGAGTACCGGAACTCTCTGGAGCGCTACGCTTACCTGTACGTGGACGACCGCAAAGAGTTCATGCGTCAGTTCCTGCTGTACGGCCATGTGCTGACGAGCCAGGAGATCGAGGAGCACGCTGAACACGGCGTCCCAGAATCCCCTCCGACTCTAGAGCGCTTCCGGCAGCAGGTAGACTCCTACGAGCGTCTGTATGAGGAGCTGCAGCGGATGGAGCCTGTGATGGTGTTCGAGCGCTGGATGAGGGTGGACGCTCGCGCCTTCAAGAGCGCGCTGCTCAACACCGTCAAGAAGTGGAGCTTGATGTTCAAACAGCACCTCATCGACCACGTCACTAACAG
Seq C2 exon
TCTGTCTGACCTGGAGGAGTTCATCCGGCTGACTGAGGCCGGTCTGGGGCAGAAGGTGGAGGAGGGTGACTATAGAGGACTGGTGGAGATCATGGGTTTCCTGATGGCGGTGAAGGAGAGACAGAGCAGCACGGATGAGATGTTTGAGCCTCTGCAGCAAACCATTGACCTGCTCAAGACTTACGAGCAGGAGCTGCCGGATGTAGTCTACAAACAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGATTAGAGCCGCTGTTT
R:
TTTGCTGCAGAGGCTCAAACA
Band lengths:
350-775
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]