GgaEX6015788 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1053823-1056173:+
Coord C1 exon
chr18:1053823-1054019
Coord A exon
chr18:1054100-1054524
Coord C2 exon
chr18:1055951-1056173
Length
425 bp
Sequences
Splice sites
3' ss Seq
GCTCTGCTTCCCTCCCCCAGGCT
3' ss Score
10.35
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATCCCAAGGCAGGGCTTGCCCCCTTGTTTGAAGTGCAGCTGGATTTAGTGATCCCAGATTTGATTTTTCGTCCCTCCCTGGACCCCGGCACAAATGATGGCTTCTATGACATGGTGGAAAGCCTTCTCAATGACATCTACCGCATCTCCTCGCTGGTGCCCAGGCTGGCCAGGCACAGTGGCTTCCCCCACTACCAG
Seq A exon
GCTGACATGGAGGACATGGCTGACCTGGCTGACATGCGCCACGACCTGCTGGGCCGCGTGCAGGCTGTGATGGCGGCCTGTTGTGAATACCGCAGCAGCTTCGATCGCTACTCTTACCTCTATGGGGATGACCGAAAGGAATTCTTCCGCCAGTTCCTTCTCTATGGGCACATCCTCACCGCTGCAGAAGTCGAGGCTCATGCAGAGGATGGGGTCCCTGAGACATCCCCCACCCTTGAGCAGTTCAGGGAGCAGATTGACTCCTATGAGAAGATTTATGAGGAGGTGAATCGCATCGAGCCCATCAGCATCTTCCACAGCTGGATGAAGGTCGACGCGCGGCCTTTCAAGGCGTCCTTGCTGAATGTGGTGAAAAGGTGGAGTTTGTTGTTCAAGCAGCATCTCATTGACCACGTCACACACAG
Seq C2 exon
CTTGACTGACCTTGAAGAGTTCATAAAAACTGCTGATGAAGGTCTGAGCAAAAAAGTTGAAAAAGGAGATTATGATGGCTTGGTGGAGATTATGGGTCATCTCATGGCCGTTAAAGAAAGGCAGAGTGTCACTGATGCCATGTTTGAGCCCCTGAAGCAAACCGTGGAGCTGCTGAAGGCGTATGAGCAACAGCTGCCCGAGGAAGTCCATAAGCAACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGCCCCCTTGTTTGAAGT
R:
TGCTTCAGGGGCTCAAACATG
Band lengths:
343-768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]