HsaEX6021160 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11669064-11690436:+
Coord C1 exon
chr17:11669064-11669260
Coord A exon
chr17:11669370-11669794
Coord C2 exon
chr17:11689566-11690436
Length
425 bp
Sequences
Splice sites
3' ss Seq
CCGTTGTCTCGCTTCCCCAGGTC
3' ss Score
11.98
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
AGTGTAAGGCAGGACTTACCCCAATATTTGAAGCACAACTGAGTCTAGCCATCCCAGAGCTAGTTTTCTATCCGTCTCTGGAGTCTGGAGTGAAGGGGGGTTTCTGTGACATTGTTGAGGGTCTCATCACCAGCATTTTTAGGATACCATCTCTGGTGCCACGGCTTTCCCCACAAAATGGCTCTCCTCACTATCAG
Seq A exon
GTCGACCTGGACGGTATACCAGATTTGGCAAACATGCGGCGCACACTCATGGAGAGAGTCCAGAGAATGATGGGCCTCTGCTGTGGCTATCAGAGCACCTTCAGCCAGTATTCGTACCTCTATGTGGAGGACCGGAAGGAGGTTCTGGGTCAGTTTCTGCTGTACGGGCACATCCTCACTCCGGAAGAAATTGAAGACCATGTGGAAGATGGCATCCCAGAGAACCCTCCCCTCCTTTCTCAGTTTAAAGTGCAAATCGACTCCTATGAAACGCTCTATGAAGAGGTGTGCAGGCTGGAACCCATCAAGGTGTTTGACGGCTGGATGAAAATTGATATTCGACCCTTTAAGGCATCTCTGCTGAATATTATTAAGAGGTGGAGCCTCCTGTTCAAACAGCATCTTGTGGACCACGTCACTCACAG
Seq C2 exon
GTTTGATAGCATCCACCCTCATCAAATGCTGGATGCCAGGCACATCGAGATCCAGCAGATGGAATCCACTATGGCCTCCATTTCTGAGTCTGCCAGCTTATTTGAAGTCAATGTCCCTGACTATAAGCAGCTGAGGCAGTGCAGGAAGGAGGTCTGCCAGCTGAAGGAGCTCTGGGACACCATTGGAATGGTGACCTCCAGCATCCATGCCTGGGAGACCACACCCTGGAGGAATATCAACGTGGAAGCCATGGAGTTGGAGTGCAAACAGTTTGCCCGGCATATCCGAAACCTGGACAAGGAGGTCAGGGCCTGGGATGCATTCACAGGCCTGGAAAGCACTGTGTGGAACACGCTGAGCTCCCTGAGGGCAGTAGCTGAGCTGCAGAATCCAGCCATCCGGGAGCGGCACTGGAGGCAGCTGATGCAGGCCACCGGTGTGAGCTTCACTATGGACCAGGACACCACCCTAGCGCACCTGCTGCAGCTCCAGCTGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174_MULTIEX2-7/12=6-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083938=DHC_N2=PU(59.9=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGGTCTCATCACCAGCAT
R:
CTCCAACTCCATGGCTTCCAC
Band lengths:
344-769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains