HsaEX6021157 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11680723-11693998:+
Coord C1 exon
chr17:11680723-11680889
Coord A exon
chr17:11689566-11690436
Coord C2 exon
chr17:11693868-11693998
Length
871 bp
Sequences
Splice sites
3' ss Seq
GAACACACTGTGTTTTGTAGGTT
3' ss Score
6.64
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GAGCTGCCTGAGAAATGGAACAACATAAAAAAGGTGGCCATTACTGTGAAGCAGCAGGTGGCCCCACTGCAGGCAAATGAAGTGACACTCCTCCGCCAGAGGTGCACAGCCTTCGATGCAGAACAGCAGCAATTCTGGGAGCAATTCCACAAAGAAGCCCCGTTCAG
Seq A exon
GTTTGATAGCATCCACCCTCATCAAATGCTGGATGCCAGGCACATCGAGATCCAGCAGATGGAATCCACTATGGCCTCCATTTCTGAGTCTGCCAGCTTATTTGAAGTCAATGTCCCTGACTATAAGCAGCTGAGGCAGTGCAGGAAGGAGGTCTGCCAGCTGAAGGAGCTCTGGGACACCATTGGAATGGTGACCTCCAGCATCCATGCCTGGGAGACCACACCCTGGAGGAATATCAACGTGGAAGCCATGGAGTTGGAGTGCAAACAGTTTGCCCGGCATATCCGAAACCTGGACAAGGAGGTCAGGGCCTGGGATGCATTCACAGGCCTGGAAAGCACTGTGTGGAACACGCTGAGCTCCCTGAGGGCAGTAGCTGAGCTGCAGAATCCAGCCATCCGGGAGCGGCACTGGAGGCAGCTGATGCAGGCCACCGGTGTGAGCTTCACTATGGACCAGGACACCACCCTAGCGCACCTGCTGCAGCTCCAGCTGCACCACTATGAGGATGAGGTCCGGGGCATTGTGGACAAAGCTGCAAAAGAGATGGGTATGGAGAAAACCTTAAAGGAGCTGCAGACTACCTGGGCTGGCATGGAATTCCAGTATGAGCCCCACCCACGGACCAATGTCCCCCTCCTGTGCTCTGATGAGGACCTCATAGAGGTTCTGGAGGATAATCAAGTTCAACTTCAGAACCTGGTGATGTCCAAGTATGTTGCTTTCTTCTTGGAGGAGGTGTCGGGCTGGCAGAAGAAGCTGTCCACAGTGGACGCTGTCATCTCTATCTGGTTTGAAGTGCAGCGAACATGGACTCACCTGGAAAGCATATTCACTGGATCTGAAGATATTCGGGCACAGCTACCCCAG
Seq C2 exon
GATTCTAAAAGGTTTGAAGGCATCGACATTGACTTTAAAGAGCTAGCTTATGATGCCCAGAAAATTCCAAATGTAGTGCAAACCACCAACAAGCCAGGCCTGTATGAAAAGCTGGAGGATATTCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'42-38,'42-37,43-38
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(59.9=85.2)
C2:
PF083938=DHC_N2=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCCTGAGAAATGGAAC
R:
TGCCCTGAATATCCTCCAGCT
Band lengths:
297-1168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains