RnoEX0028641 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52601162-52625057:-
Coord C1 exon
chr10:52624891-52625057
Coord A exon
chr10:52604686-52605556
Coord C2 exon
chr10:52601162-52601292
Length
871 bp
Sequences
Splice sites
3' ss Seq
GAATGTGTTGTGCTTTCTAGGTT
3' ss Score
9.66
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAACTTCCGGAGAAGTGGAAGAATGTGAAGAAGATGGCCATCACTGTGAGGCAGCAGGTGGCCCCTCTACAGGCAAATGAAGTGGCCCTCCTCCGCCAGCGGTGCTCAGCCTTTGATGATGAACAGCAGCAATTCCAGGAGAGGTTCCACAAAGAAGCTCCCTTCAG
Seq A exon
GTTTGATAGTATCAATCCACATCAAATGCTAGATGTCTGGCACATGGAGATCCAGCACATGGAATCGACCATGGCAACCATCTCCAAGTCAGCTGATTTGTTTGAAGTCAATGTTCCTGACTACAAGCAGCTGAGGCAGTGCAGAAAGGAGGCCTGTCAGCTAAAGGAACTCTGGGACACCATTGGAATGGTGACTTCCAGTATCCAAGCCTGGGAGGCCACCAGCTGGAGGAATATCAGTGTGGAAGCCATGGACTCAGAGTGCAAGCAGTTCGCCCGGCAAATCCGCAACCTAGATAAGGAGTTCAGAACCTGGGATGCATTCACAGGCCTGGAAAGCACAGTACTGAACACTCTGACCTCCCTGAGGGCCGTGGCTGAGCTGCAGAATCCTGCCATCCGGGAACGGCACTGGAGGCAACTGATGCAGGCCACAGGGGTGAATTTCACCATGGATCGGGACACCACCCTAGCTCACCTCCTGCAGCTTCAGCTCCACCACTTTGAGGATGAGGTCCGGGACATTGTGGACAGAGCAGTCAAAGAGATGAGTATGGAGAAGACCTTAAAGGAATTGCAGACTACCTGGGCCAGCATGGAGTTCCAGTATGAGACCCATGCGCGAACCCACATACCCTTGCTGCAGTCAGATGAGGACCTCATTGAGGTCCTGGAGGACAATCAGGTGCAACTTCAGAACCTGATGATGTCCAAGTATGTTGCTTTCTTCCTGGAAGAAGTGTCAAGCTGGCAGAAGAAGCTGTCCACGGCTGACTCGGTCATCTCTATCTGGTTTGAGGTGCAGCGTACCTGGTCTCACCTGGAGAGCATATTCATTGGCTCGGAAGACATCCGTGCTCAGCTACCCCAG
Seq C2 exon
GACGCTAAGAGATTTGAAAGCATTGACTCTGACTTCAGAGAGCTGGTGTATGATGCTCAGAAAACCCCAAATGTGGTCGAAGCCACAAATAAGTCAGGTCTCTATGAAAAACTGGAAGATATTCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'26-23,'26-22,29-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(59.9=85.2)
C2:
PF083938=DHC_N2=FE(10.4=100)
Main Skipping Isoform:
ENSRNOT00000005583fB4270
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGGAGAAGTGGAAGAATGTG
R:
CTGCTCTGAATATCTTCCAGTTTT
Band lengths:
294-1165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]