GgaEX7009425 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1057984-1061035:+
Coord C1 exon
chr18:1057984-1058150
Coord A exon
chr18:1058477-1059347
Coord C2 exon
chr18:1060905-1061035
Length
871 bp
Sequences
Splice sites
3' ss Seq
CAATAACATTTTTTTTCTAGGTT
3' ss Score
7.67
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAGCTGCCAGAAAAATGGAACAATATAAAGAAGCAGGCGATAGCTGTGAAGCAGCATGTGGCTCCTCTGCAGGCAAACGAAATGGCAGCTCTGCGCAGGAGCTGTGCGGCCTTTGATGCTGAGCAGCACAGATTCAGAGAGAGGTTTCGGAAAGAAGCTCCGTTCAG
Seq A exon
GTTTGATGCTGAAAAGCCTTATCAACTGCTGGATGCAAAGAACATTGAGATGAAACAAATGGAGTCAGCCATGACCTCGATTTATGAATCAGCTGCTCTGTTTGAAGTCATGGTGCCAGACTGTAAACAACTGAAGCAGTGCAGAAAGGAGATGTGTCTTCTCAAAGAGCTCTGGGATATGATCTCGGTTGTGAACAGCAGCCTTGAGGACTGGCAGACCACCAAATGGGTGGATATTAACGTGGAAAACATGGATCTCGAGTGCAAAAAGTTTGCAAGAGAGATTCGAAATTTGGATAAAGAGATGAGGGCATGGGGTGCTTTCACAGGGCTGGACAGCAGAGTGAAGAACATGCTGACAGCCCTGAAAGCTGTAGCAGAACTTCAAAATCCTGCTATTAGAGAAAGGCATTGGGGTCAACTGATGCAGGTGACGGGTGTGAAGTTCGTGATGGACTCTGACACCACGCTGGCTGATCTTCTGAAGCTCTGCCTGCATAACTTTGAGGATGAGGTTCGTGGAATTGTGGACAAAGCAGTGAGAGAAATGAGCATGGAGAAGGTGCTGAAGGAACTAAAAATGACCTGGAGCAGCATGGAGTTTCAGTACGAGCCTCACCCACGGACAAACATCCCATTGCTGAAGTCGGACGAAGAACTCATTGAAACTCTGGAAGACAACCAGGTGCAGCTGCAGAATTTAATGACGTCCAAATGCATTGCTTTTTTCTTGGAGGAAGTATCTGTGTGGCAGAGGAAACTATCCACTGTGGACTCTGTCATTTCCCTCTGGTTTGAAGTGCAGCGTACATGGTGTCACCTGGAGAGCATATTCATAGGCTCAGAAGATATACGGACACAGCTTCCAGAG
Seq C2 exon
GACTCCAAACGCTTTGAAGGCATTGATGTTGATTTTAAGCAACTGGCTTATGAAGCTCGGGAAACCCCAAATGTAGTTGAAGCCACCAATAAACCAGGCCTTCCCCAACAACTGGAGAACATTCAGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(59.9=85.2)
C2:
PF083938=DHC_N2=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGCCAGAAAAATGGAACA
R:
ACTCTGAATGTTCTCCAGTTGT
Band lengths:
296-1167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]