DreEX6067098 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:178376-180733:-
Coord C1 exon
chr12:180567-180733
Coord A exon
chr12:179483-179990
Coord C2 exon
chr12:178376-178738
Length
508 bp
Sequences
Splice sites
3' ss Seq
GTTGGTTTGTTTGTGTTCAGGTT
3' ss Score
7.81
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
Exon sequences
Seq C1 exon
GTGCTGCCGGAGAAGTGGAACAACATGAAGAAGCAGGCGGTGCAGGTGAAGCAGCATGTGGCTCCGCTGCAGGCCGCAGAGGTGGCTAACCTGCGCAGGAGATGTGCTGCGTTCGACGTGGAGCAACACACCTTCAGGGAGACCTTCCGCAAGAAACACTTCTTTAG
Seq A exon
GTTTGACAGTGTAAATGTGCACGAGCAGCTGGACACAACGCACACACAGATCCAGGAGCTGGAGAGTCTGATGGCGGGCCTCACGGAGTCGGCCAATCTGTTTGAGGTGGGCGTGCCGGACTACAGGCAGCTGAAGCAGTGCCGCAGGGAGCTGCCGCTGCTGAAGGAGCTGTGGGACCAGGCGCTGGCGGTGCGCTCCTGTCTGGAGGCCTGGCAGAGGACGCCCTGGAGCCAGATCAACGTGGACGACATGGAGACGGAGTGCAAGCGATTCTCCAAGGAGCTGCGGCTGCTGGATAAAGAGGCACGGGCGTGGGACGTGTTCAATGGGCTGGACGGGATGGTGAAGAACACACTGACGTCACTGAGAGCGGTGGCAGAGCTGCAGAATCCGGCCATCCGCCCGCGCCACTGGCAGCAACTGATGGCAGCCACTGGAGTGCAGTTCACCATGGACCAGGACACCACCCTCGCAGACCTGCTGCGCCTCAACCTGCACCACTTCGAG
Seq C2 exon
GAGGAGGTGCGGGGCATCGTGGACCGTGCGGTGAAGGAGATGGGCATGGAGAAGGTGCTGGGCGAGCTGGACGCCACCTGGACCAGCATGAGCTTTGAGTTCGAGGCTCACCCGCGGACGCAGGTTCCTCTGCTGAAGTCCAGCGAGGAGCTGATCGAGACGCTGGAGGACAACCAGGTGCAGCTGCAGAACCTGATGTCCTCCAAGTACATCTCCTTCTTCCTGGAGGAGGTGTCGTCATGGCAACGCAAGCTGTCCGTCACCGACTCCGTCATCTCCATCTGGTTCGAGGTGCAGAGGACCTGGTGTCACCTGGAGAGCATCTTCATCGGCTCTGACGACATCCGCTCACAGCTGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'19-19,'19-18,20-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(30.7=74.7)
C2:
PF083938=DHC_N2=FE(29.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAACACACCTTCAGGGAG
R:
CTCTGCACCTCGAACCAGATG
Band lengths:
346-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]