BtaEX0011627 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31033200-31047094:+
Coord C1 exon
chr19:31033200-31033366
Coord A exon
chr19:31042587-31043457
Coord C2 exon
chr19:31046964-31047094
Length
871 bp
Sequences
Splice sites
3' ss Seq
CATTCTGTCTTGTCTTGCAGGTT
3' ss Score
13.04
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GAGCTGCCCGAGAAGTGGAACAACATTAAAAAGACGGCGGTTACCGTGAGGCAGCAGGTGGCCCCCCTGCAGGCAAATGAAGTGACCCTCCTGCGCCAGCGGTGCACGGCCTTCGAGGCGGAGCAGCAGGCCTTCTGGGAGCGATTCCGTAGAGAAGCGCCCTTCAG
Seq A exon
GTTTGATAGCATTGACCCTCACCAGACGCTGGATGCCTGGCACTTGGAGACCCAGCAGATGGAGTCCACCATGGCCTCCATTTCCGCGTCCGCCAGCTTGTTTGAAGTCACCGTCCCTGACTATAAGCAGCTGCGGCAGTGCAGGAAGGAGGCGTGCCGGCTGAAGGAGCTCTGGGACACGATTGGGTTGGTGACCTCCAGCATTCATGCCTGGGAGGCCACCAGGTGGAAGGATATCGACGTGGAGGCCATGGACTTGGAGTGCAAAAGGTTTGCCAGGAACATCCGGAACCTCGACAAGGAGGTCAGGGCCTGGGAGGCCTTCACAGGCCTGGAGAGCACCGTGCTGGACACCCTGACCTCCCTGAGGGCCGTGGCCGAGCTGCAGAACCCGGCCATCCGGGAGCGGCACTGGAGGCAGCTGATGCAGGCCACGGGCGTGACCTTCACCATGGATGAGGGCACCACCCTGGCCCACCTCCTGCAGCTGCAGCTGCACCACTTTGAGGACGAGGTCCGGGGCATTGTGGACAGAGCTGTGAAAGAGCTGAGCATGGAGAAGGTGCTGAAGGAGCTGCAGACCACCTGGGCTGGCATGGAATTCCAGTACGAGCCCCACCCACGGACCTGTGTGCCCCTGCTGCAGTCCGACGAGGACCTCATCGAGGTTCTGGAGGATAACCAGGTCCAGCTTCAGAACCTGATGGTGTCCAAGCACATTGCCTTCTTCCTGGAGGACGTGTCGGGCTGGCAGAAGAAGCTGTCCACCGCCGATGCCGTCATCTCCATCTGGTATGACGTGCAGCGCACATGGTCTCACCTAGAAAGCATATTCATCGGATCTGAAGATATCCGGGCTCAGCTGCCCCAG
Seq C2 exon
GATTCTAAAAGATTTGAAGGCATCGACATAGACTTTAAAGAGTTAGCTTATGATGCTCGGAAAACGCCAAATGTAGTGGAAGCCACCAACAAGCCAGGTCTTTACGAAAAGCTGGAAGATATTCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'20-27,'20-26,21-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.003 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083938=DHC_N2=PU(59.9=85.2)
C2:
PF083938=DHC_N2=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCGAGAAGTGGAACAAC
R:
CTGCTCTGAATATCTTCCAGCT
Band lengths:
295-1166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development