MmuEX6086207 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65908739-65922088:-
Coord C1 exon
chr11:65921892-65922088
Coord A exon
chr11:65921376-65921800
Coord C2 exon
chr11:65908739-65908961
Length
425 bp
Sequences
Splice sites
3' ss Seq
CTGTTATCTCACTCCCCCAGGGT
3' ss Score
10.45
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AATGCAAGCCTGGACTCACCCCAGTATTTGAAGCACAGCTCAACCTTGTCACCCCAGAATTAGTTTTCCACCCCTCTCTGGACTCTGGGGTAAAGGGAGGCTTATATGACATTGTCCAGAGTCTTGTCACCAGAATTTTTGCTATGCCATCCCTCGTGCCACGGCTTTCCCCACACAGTGGCTCTCCTCACTATCAG
Seq A exon
GGTGACCTAGAGGACATGGCCGACTTAGCTGGTCTTCGGAGTGTGCTCATGGAGAGGGTACAGAATATGATGACCCTCTGCTGTGGCTATAGAAATACCCTCAGCCAGTATTCTTACCTGTATGTGGAGGATAGGAAGGAGATTCTTGGTCAGTTTCTGCTCTATGGGCATGTCCTCACACCTGAAGAGATAGAAGCCCATGCCGAAGACGGCATTCCAGAAAATCCACCCCTCCTCCATCACTTCAAAGACCAGATAGACTCCTATGAAAAGCTCTATGAGGAGGTGGTCAGCCTGGAACCCACCAAGGTGTTTGATGGCTGGATGCGAGTGGATGTGAGACCCTTCAAAGCATCTCTGCTGAACACAATAAAGAAGTGGAGCCTCATGTTCAAGCAACATCTTGTTGACTTTGTCACAAACAG
Seq C2 exon
CCTGTCTGACCTTGACTCATTCATAAGGAGCACCGAGAGTGGTTTGCTCAAGAGGGTGGAGAAAGGAGATTTCCAAGGATTGGTTGAGATCATGGGACATCTTGTCACCCTTAAAGAACGGCAGAGCAGCACCGATGACATGTTTGAGCCCCTGAAGCAAACGATTGAACTGCTGAAGTCCTACGAACAAGAGCTGCCAGAAACCGTGTTTAAGCAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'17-17,'17-16,18-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.035 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCACCCCTCTCTGGACTC
R:
TAAACACGGTTTCTGGCAGCT
Band lengths:
345-770
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: