MmuEX6086205 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65921892-65931152:-
Coord C1 exon
chr11:65930911-65931152
Coord A exon
chr11:65925754-65925889
Coord C2 exon
chr11:65921892-65922088
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTCTTTCTTCTGTAGGAA
3' ss Score
12.93
5' ss Seq
CTGGTACCT
5' ss Score
4.11
Exon sequences
Seq C1 exon
GCATTTGGGATTATGCTATGCAAATAACCAATAGCATTCATGACCTGGAACAAAGAATTCAGAAGACAAAAGACAATGTGGAAGAGATTCAAAACATCATGAAAACATGGGTGTCTCCAATATTCAAGAGAAAAGATGGGAAAAAAGAATGGCCCCTTTCTCTGGATGATCAGCAGGATCACATGGAAAAATACTACAGTCTCATCCAGGAATCTGGCCTTAAGATTCACGCTCTTGTTCAG
Seq A exon
GAAAACCTGGTTCTGTTTGCAGCAGACCCAGCATCCAGCATTTGGAAGTCTTACGTGAACTACATTGATTCCATGTTGTTGGATGGATTTTTTCTTGCCATTGAGTGTTCTCTCAAATATCTATTGGAAAACACTG
Seq C2 exon
AATGCAAGCCTGGACTCACCCCAGTATTTGAAGCACAGCTCAACCTTGTCACCCCAGAATTAGTTTTCCACCCCTCTCTGGACTCTGGGGTAAAGGGAGGCTTATATGACATTGTCCAGAGTCTTGTCACCAGAATTTTTGCTATGCCATCCCTCGTGCCACGGCTTTCCCCACACAGTGGCTCTCCTCACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'15-15,'15-14,16-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(1.0=7.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCCTTTCTCTGGATGAT
R:
CACGAGGGATGGCATAGCAAA
Band lengths:
251-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: