BtaEX6087275 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31011105-31022085:+
Coord C1 exon
chr19:31011105-31011349
Coord A exon
chr19:31018456-31018591
Coord C2 exon
chr19:31021889-31022085
Length
136 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTCTTTGTTTTGTAGGAA
3' ss Score
10.95
5' ss Seq
CTGGTATTT
5' ss Score
3.5
Exon sequences
Seq C1 exon
CAGGTATTTGGGATTATGTCATTCAGATCACCAATAGTATTCATGATCTCGAACAAAGAATTCAGAAAACTAAAGACAATGTGGAAGAGATTCAGAGCATCATGAAAACATGGATGTCACCAATGTTTAAGAGAAAAGATGGGAAAAAGGAATGCCTTCTCTCTATGGATGATCAGCATGATCGAGTGGAAAAATATTACTGTCACATCAAAGAATCTGGCCTGAAGATCCATGCCCTTGTGCAG
Seq A exon
GAAAACCTGGGTCTTTTTTCAGCAGATTCAACTTCTGATATCTGGAAAACGTATGTTAACTACATTGATGATATGTTGCTGGATGGATTCTTTCTTGCCATTGAGTGTTCCCTCAAGTACCTCCTGGAAAATACTG
Seq C2 exon
AAGGTAAGGCAGGACTCACCCCGATATTTGAAGCCCAGCTGAGCTTAGCCATCCCAGAACTGGTTTTCCGTCCGTCACTGGAGCCTGGTGTGAAGGGCGGCTTCTACGACCTGTTGGAGGGTCTCGTCACCAGCATCTTCAGCATGGCGTCCTTGGTGCCCCGGCTTTCTCCTGAGAGTGGCTCTCCCCACTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'15-21,'15-19,16-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(1.2=8.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCTCTCTATGGATGATCAGC
R:
AAGGACGCCATGCTGAAGATG
Band lengths:
246-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]