BtaEX6087274 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31018456-31022607:+
Coord C1 exon
chr19:31018456-31018591
Coord A exon
chr19:31021889-31022085
Coord C2 exon
chr19:31022183-31022607
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTCTTTGTATTTCAGAAG
3' ss Score
9.5
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAAAACCTGGGTCTTTTTTCAGCAGATTCAACTTCTGATATCTGGAAAACGTATGTTAACTACATTGATGATATGTTGCTGGATGGATTCTTTCTTGCCATTGAGTGTTCCCTCAAGTACCTCCTGGAAAATACTG
Seq A exon
AAGGTAAGGCAGGACTCACCCCGATATTTGAAGCCCAGCTGAGCTTAGCCATCCCAGAACTGGTTTTCCGTCCGTCACTGGAGCCTGGTGTGAAGGGCGGCTTCTACGACCTGTTGGAGGGTCTCGTCACCAGCATCTTCAGCATGGCGTCCTTGGTGCCCCGGCTTTCTCCTGAGAGTGGCTCTCCCCACTATCAG
Seq C2 exon
GGGGACTTGGAGGCCAGGGCTGACCTGGCGGGCCTGCGGGCCGAACTGATGGGGCGGGTGCAGGCCATGATGGCCCTCTGTGGCGACTACCGCAGCACCCTCAGCCAGTACTCCTGCCTCTACACGGAGGACCGGAAGGAGGCTCTGGGCCAGTTTCTGTTGTACGGCCGCGTGCTCACAGCCGAGGAGGTGGAAGCCCACGCCGAGGACGGCATCCCAGAGAATCCTCCCCTCCTGCATCAGTTCAGGGCGCAGATCGACTCCTACGAGAAGCTCCATGACGATGTGTGCAAGCTGGAGCCTGTCCGGGTCTTTGACAGCTGGATGAAGATCGATGTGCGGCCCTTTAAAGCATCTCTGCTAAATATAATAAAAAAGTGGAGCCTCATGTTCAAACAGCATCTCGTGGACCATGTCACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'16-22,'16-21,17-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCCTCAAGTACCTCCTGG
R:
ATTCTCTGGGATGCCGTCCTC
Band lengths:
256-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]