HsaALTA1001267-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000011028 | MRC2
Description
mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
Coordinates
chr17:62688501-62688960:+
Coord C1 exon
chr17:62688501-62688664
Coord A exon
chr17:62688852-62688877
Coord C2 exon
chr17:62688878-62688960
Length
26 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
GAGCAGCTCCCTCCCCCCAGACC
3' ss Score
7.31
Exon sequences
Seq C1 exon
CATTCATCACAGCCAGCCTGCCCAATGTGACCTTTGACCTTTGGATTGGCCTCCATGCCTCGCAGAGGGACTTCCAGTGGGTGGAGCAGGAGCCTTTGATGTATGCCAACTGGGCACCTGGGGAGCCCTCTGGCCCTAGCCCTGCTCCCAGTGGCAACAAACCG
Seq A exon
ACCAGCTGTGCAGTGGTCCTGCACAG
Seq C2 exon
CCCCTCAGCCCACTTCACTGGCCGCTGGGACGATCGGAGCTGCACGGAGGAGACCCATGGCTTCATCTGCCAGAAGGGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011028-52-51,52-49,52-48,52-47-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.313 A=NA C2=0.387
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(46.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(28.2=89.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGACTTCCAGTGGGTG
R:
AGTGAAGTGGGCTGAGGGG
Band lengths:
121-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains