RnoALTA0024531-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006548 | Mrc2
Description
mannose receptor, C type 2 [Source:RGD Symbol;Acc:1559436]
Coordinates
chr10:93576828-93577232:+
Coord C1 exon
chr10:93576828-93576991
Coord A exon
chr10:93577124-93577149
Coord C2 exon
chr10:93577150-93577232
Length
26 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
AAGTAGCCTCTTCCCCTCAGACC
3' ss Score
4.86
Exon sequences
Seq C1 exon
CGTACATCACGGCCAGCCTCCCCAATGTGACCTTTGACCTCTGGATTGGCCTGCATGGCTCTCAGAGGGACTTCCAGTGGATTGAGCAGGAACCTCTGCTCTATACCAATTGGGCACCAGGAGAGCCCTCTGGACCCAGCCCTGCTCCCAGTGGCACCAAGCCG
Seq A exon
ACCAGCTGTGCGGTGATTCTGCACAG
Seq C2 exon
CCCCTCAGCCCACTTCACTGGCCGCTGGGATGATCGGAGCTGCACAGAGGAGACGCACGGCTTCATCTGCCAGAAGGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006548-27-32,27-31,27-30-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=NA C2=0.189
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(46.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(28.2=89.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGCTCTATACCAATTGGGC
R:
CTCTGTGCAGCTCCGATCATC
Band lengths:
121-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]