HsaALTA1004215-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000064687 | ABCA7
Description
ATP binding cassette subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr19:1054006-1054341:+
Coord C1 exon
chr19:1054006-1054110
Coord A exon
chr19:1054193-1054201
Coord C2 exon
chr19:1054202-1054341
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GACCCTCTCATCCCTCACAGCTG
3' ss Score
9.82
Exon sequences
Seq C1 exon
ATGGCAGCTGCGGGCAGCACCTATGCACAGGCATTGCTGGCCTAGACGTAACCCTACGGCTCAAGATGCCGCCACAGGAGACAGCGCTGGAGAACGGGGAACCAG
Seq A exon
CTGGGTCAG
Seq C2 exon
CCCCAGAGACTGACCAGGGCTCTGGGCCAGACGCCGTGGGCCGGGTACAGGGCTGGGCACTGACCCGCCAGCAGCTCCAGGCCCTGCTTCTCAAGCGCTTTCTGCTTGCCCGCCGCAGCCGCCGCGGCCTGTTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687-51-49,51-48-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.307
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCTAGACGTAACCCTA
R:
CAGAGCCCTGGTCAGTCTCTG
Band lengths:
94-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains