MmuALTA1045965-6/6 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80007136-80007451:+
Coord C1 exon
chr10:80007136-80007228
Coord A exon
chr10:80007300-80007429
Coord C2 exon
chr10:80007430-80007451
Length
130 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CACCCTCCCATCCCCCACAGCTA
3' ss Score
10.09
Exon sequences
Seq C1 exon
GTGGGGACTCTAGACCGCAGCTGCACCTTCGCACATGCACTCCACAGCCCCCCACAGGGCCAGAGGCATCAGTTCTGGAGAATGGGGAGCTGG
Seq A exon
CTAAGCTGGTGCTGGATCCCCAAGCCCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGCAAGGCTGGACACTTACCTGTCAACAGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCTTGCTCGCCGCAG
Seq C2 exon
CCGCCGGGGCCTGTTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-43-54,43-53,43-52,43-51,43-50,43-49-6/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGACTCTAGACCGCA
R:
CTGTGCAAACAGGCCCCG
Band lengths:
115-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types